Difference between revisions of "Hackathon 2013/DataIntegration"
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*GenBank Integration | *GenBank Integration | ||
**be able to pull genetic sequences from OTUs from TaxonWorks: | **be able to pull genetic sequences from OTUs from TaxonWorks: | ||
− | ** | + | **[https://github.com/daisieh/miscellaneous/blob/master/esearch.rb Ruby script] to pull sequence data from GenBank |
+ | |||
*Phylotastic Integration | *Phylotastic Integration | ||
− | **Patch into the Phylotastic architecture (once it is up and running) to add a list of species from | + | **Patch into the Phylotastic architecture (once it is up and running) to add a list of species from TaxonWorks and get a tree |
*NexML Parser | *NexML Parser | ||
**be able to add a NexML file with any information of choice | **be able to add a NexML file with any information of choice | ||
− | * | + | *Visualization On Maps |
**Specimen on google maps, shapefiles, tile srves from GBIF, map of life API | **Specimen on google maps, shapefiles, tile srves from GBIF, map of life API | ||
+ | |||
+ | ==People== | ||
+ | |||
+ | *Daisie Huang | ||
+ | *Julie Allen |
Latest revision as of 10:56, 4 October 2013
The Data Integration pitch is a combination of many pitches for how to use TaxonWorks with other databases:
- GenBank Integration
- be able to pull genetic sequences from OTUs from TaxonWorks:
- Ruby script to pull sequence data from GenBank
- Phylotastic Integration
- Patch into the Phylotastic architecture (once it is up and running) to add a list of species from TaxonWorks and get a tree
- NexML Parser
- be able to add a NexML file with any information of choice
- Visualization On Maps
- Specimen on google maps, shapefiles, tile srves from GBIF, map of life API
People
- Daisie Huang
- Julie Allen