Difference between revisions of "Hackathon 2013/Citations"

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(Terms)
(URLs of taxonomic significance: Tweaked section)
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* RIS?
 
* RIS?
  
== URLs of taxonomic significance ==
+
== URLs and identifiers of taxonomic significance ==
 
It should be noted that there will be multiple identifiers associated with a single source.
 
It should be noted that there will be multiple identifiers associated with a single source.
 
* ISBN/ISSN
 
* ISBN/ISSN
* BHL
+
* BHL URLs
* PubMed
+
* PubMed ID/URLs
* DOI
+
* DOI ID/URLs
* Google Scholar
+
* Handle ID/URLs?
* Mendeley/Zotero/EndNote
+
* Mendeley/Zotero/EndNote ID/URLs
  
 
== APIs available ==
 
== APIs available ==
 
* [http://biodivlib.wikispaces.com/Developer+Tools+and+API The BHL API] can be used to get bibliographic information on BHL pages and publications.
 
* [http://biodivlib.wikispaces.com/Developer+Tools+and+API The BHL API] can be used to get bibliographic information on BHL pages and publications.
 
* [http://apidocs.mendeley.com/home/public-resources/search-details The Mendeley API] can be used to get abstract, keywords, and search.
 
* [http://apidocs.mendeley.com/home/public-resources/search-details The Mendeley API] can be used to get abstract, keywords, and search.

Revision as of 13:50, 30 September 2013

This pitch covers making sure that citations can flow easily in and out of TaxonWorks. It will do this in three ways:

  1. Finding an existing data model which can hold information citations with a standard format for representing it.
  2. Writing code to read this in and out in Ruby, possibly just using a standard library [1].
  3. Writing code to resolve microcitations. A working example of this has been created by Rod Page that links generic names from Nomenclator Zoologicus with references from the Biodiversity Heritage Library.
    • Micro-citations should be differentiated from verbatim references. A micro-citation is just an author and date (as seen in a full taxon name). A verbatim reference is the full reference as it appears in documentation that hasn't be broken into normalized pieces yet. Both versions need to be tracked and searchable. We also need a way to get a listing out of TW of both versions, so they can be normalized into full sources.
    • Lists of journals.
    • BHL API to convert BHL URLs into references
  4. Finding out more about a particular citation
    • Getting abstract, keywords from PubMed
    • Pulling in citation from BHL
    • ImpactStory information
  5. Designing a user interface to make it easy to resolve microcitations
    • Autocompletion
    • Journal name identification
    • Searching on Google Scholar/Wikipedia for books/authors

Contents

Terms

  • Citation: An individual, unnormalized use of a source.
  • Source: Something you want to credit in providing that data.
    • A person can be a source.
    • TW needs sources to be private or public.
  • Global source: a common pool of sources. These should be published and non-private.

Members

  • Mike Maehr
  • Beth Frank
  • Gaurav Vaidya

Datasets we can play with

  • ITIS
  • GNUB
  • UCD

Input/output formats

  • BibTeX
  • RIS?

URLs and identifiers of taxonomic significance

It should be noted that there will be multiple identifiers associated with a single source.

  • ISBN/ISSN
  • BHL URLs
  • PubMed ID/URLs
  • DOI ID/URLs
  • Handle ID/URLs?
  • Mendeley/Zotero/EndNote ID/URLs

APIs available

  • The BHL API can be used to get bibliographic information on BHL pages and publications.
  • The Mendeley API can be used to get abstract, keywords, and search.