Difference between revisions of "Hackathon 2013/DataIntegration"
From TaxonWorks Wiki
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*GenBank Integration | *GenBank Integration | ||
**be able to pull genetic sequences from OTUs from TaxonWorks: | **be able to pull genetic sequences from OTUs from TaxonWorks: | ||
| − | **[https://github.com/daisieh/miscellaneous/blob/master/esearch.rb Ruby script] to pull sequence data from GenBank | + | **[https://github.com/daisieh/miscellaneous/blob/master/esearch.rb Ruby script] to pull sequence data from GenBank |
Revision as of 10:36, 4 October 2013
The Data Integration pitch is a combination of many pitches for how to use TaxonWorks with other databases:
- GenBank Integration
- be able to pull genetic sequences from OTUs from TaxonWorks:
- Ruby script to pull sequence data from GenBank
- Phylotastic Integration
- Patch into the Phylotastic architecture (once it is up and running) to add a list of species from TaxoNWorks and get a tree
- NexML Parser
- be able to add a NexML file with any information of choice
- Vizualization On Maps
- Specimen on google maps, shapefiles, tile srves from GBIF, map of life API
