Difference between revisions of "Hackathon 2013/DataIntegration"

Latest revision as of 10:56, 4 October 2013

The Data Integration pitch is a combination of many pitches for how to use TaxonWorks with other databases:

GenBank Integration
- be able to pull genetic sequences from OTUs from TaxonWorks:
- Ruby script to pull sequence data from GenBank

Phylotastic Integration
- Patch into the Phylotastic architecture (once it is up and running) to add a list of species from TaxonWorks and get a tree

Visualization On Maps
- Specimen on google maps, shapefiles, tile srves from GBIF, map of life API

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 The Data Integration pitch is a combination of many pitches for how to use TaxonWorks with other databases:
-*GenBankIntegration -- be able to pull genetic sequences from OTUs from TaxonWorks:
+*GenBank Integration
-**Work to write Ruby script to pull sequence data from GenBank
+**be able to pull genetic sequences from OTUs from TaxonWorks:
+**[https://github.com/daisieh/miscellaneous/blob/master/esearch.rb Ruby script] to pull sequence data from GenBank
-*
+*Phylotastic Integration
+**Patch into the Phylotastic architecture (once it is up and running) to add a list of species from TaxonWorks and get a tree
+*NexML Parser
+**be able to add a NexML file with any information of choice
+*Visualization On Maps
+**Specimen on google maps, shapefiles, tile srves from GBIF, map of life API
+==People==
+*Daisie Huang
+*Julie Allen