Difference between revisions of "Hackathon 2013/DataIntegration"

From TaxonWorks Wiki
Jump to: navigation, search
 
(8 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
The Data Integration pitch is a combination of many pitches for how to use TaxonWorks with other databases:
 
The Data Integration pitch is a combination of many pitches for how to use TaxonWorks with other databases:
  
*GenBankIntegration -- be able to pull genetic sequences from OTUs from TaxonWorks:
+
*GenBank Integration
**Work has started to write Ruby script to pull sequence data from GenBank
+
**be able to pull genetic sequences from OTUs from TaxonWorks:
 +
**[https://github.com/daisieh/miscellaneous/blob/master/esearch.rb Ruby script] to pull sequence data from GenBank
  
*PhylotasticIntegration -- Patch into the Phylotastic architecture (once it is up and running) to add a list of species from TaxoNWorks and get a tree
 
  
*NexMLParser -- add a NexML file with any information of choice
+
*Phylotastic Integration
 +
**Patch into the Phylotastic architecture (once it is up and running) to add a list of species from TaxonWorks and get a tree
  
*VizualizationOnMaps -- Specimen on google maps, shapefiles, tile srves from GBIF, map of life API
+
*NexML Parser
 +
**be able to add a NexML file with any information of choice
 +
 
 +
*Visualization On Maps
 +
**Specimen on google maps, shapefiles, tile srves from GBIF, map of life API
 +
 
 +
==People==
 +
 
 +
*Daisie Huang
 +
*Julie Allen

Latest revision as of 10:56, 4 October 2013

The Data Integration pitch is a combination of many pitches for how to use TaxonWorks with other databases:

  • GenBank Integration
    • be able to pull genetic sequences from OTUs from TaxonWorks:
    • Ruby script to pull sequence data from GenBank


  • Phylotastic Integration
    • Patch into the Phylotastic architecture (once it is up and running) to add a list of species from TaxonWorks and get a tree
  • NexML Parser
    • be able to add a NexML file with any information of choice
  • Visualization On Maps
    • Specimen on google maps, shapefiles, tile srves from GBIF, map of life API

People

  • Daisie Huang
  • Julie Allen