Difference between revisions of "Hackathon 2013/DataIntegration"
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The Data Integration pitch is a combination of many pitches for how to use TaxonWorks with other databases: | The Data Integration pitch is a combination of many pitches for how to use TaxonWorks with other databases: | ||
− | * | + | *GenBank Integration |
− | ** | + | **be able to pull genetic sequences from OTUs from TaxonWorks: |
+ | **[https://github.com/daisieh/miscellaneous/blob/master/esearch.rb Ruby script] to pull sequence data from GenBank | ||
− | |||
− | * | + | *Phylotastic Integration |
+ | **Patch into the Phylotastic architecture (once it is up and running) to add a list of species from TaxonWorks and get a tree | ||
− | * | + | *NexML Parser |
+ | **be able to add a NexML file with any information of choice | ||
− | * | + | *Visualization On Maps |
+ | **Specimen on google maps, shapefiles, tile srves from GBIF, map of life API | ||
+ | |||
+ | ==People== | ||
+ | |||
+ | *Daisie Huang | ||
+ | *Julie Allen |
Latest revision as of 10:56, 4 October 2013
The Data Integration pitch is a combination of many pitches for how to use TaxonWorks with other databases:
- GenBank Integration
- be able to pull genetic sequences from OTUs from TaxonWorks:
- Ruby script to pull sequence data from GenBank
- Phylotastic Integration
- Patch into the Phylotastic architecture (once it is up and running) to add a list of species from TaxonWorks and get a tree
- NexML Parser
- be able to add a NexML file with any information of choice
- Visualization On Maps
- Specimen on google maps, shapefiles, tile srves from GBIF, map of life API
People
- Daisie Huang
- Julie Allen